usefragsph not on There are 29 ligand heavy atoms Ligand center of coords (x y z): 16.1955172413793 14.5872068965517 3.93813793103448 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1215 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 624 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 624 Number of spheres polar: 159, nonpolar: 400, out of current total: 624 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.25794 26.12253 4.65181 24.55315 -6.00256 13.93247 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 207 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 171 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 98 Spheres center of coords (x y z): 13.6966537755102 14.9692640816326 4.02732806122449 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.26992034437018 Final number of output spheres is: 45 Number of polar spheres: 5 Number of nonpolar spheres: 39 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 29