Distance from surface specified: 1.80 There are 29 ligand heavy atoms Ligand center of coords (x y z): 16.1955172413793 14.5872068965517 3.93813793103448 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 13816 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 11513 WARNING: removing a crystallographic sphere that is distance 1.99609944642044 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 11065 Number of spheres polar: 6558, nonpolar: 3842, out of current total: 11065 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 2.19620 30.19440 0.60280 28.58580 -10.05480 17.93460 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1495 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 731 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 726 Spheres center of coords (x y z): 13.6726556473829 15.739344077135 3.51418209366391 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 12.0980834682003 Final number of output spheres is: 200 Number of polar spheres: 121 Number of nonpolar spheres: 76 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 28