Creating binding-site residue list Creating molecular surface real 0m3.860s user 0m0.582s sys 0m0.548s Creating sphgen spheres Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 0:1308 spheres. 281. 281. 281. 281. 281. 281. 281. 283. 283. 283. 283. 283. 283. 290. 292. 292. 292. 292. 295. 295. 295. 295. 295. 295. 296. 297. 297. 297. 297. 297. 297. 297. 297. 297. 297. 297. 297. 298. 298. 298. 298. 298. 298. 298. 298. 298. 298. 298. 298. 298. 299. 299. 299. 300. 300. 300. 300. 300. 300. 300. 300. 300. 300. 300. 300. 300. 300. 300. 300. 300. 300. 300. 300. 300. 300. 300. 300. 304. 304. 304. 305. 305. 305. 305. 305. 305. 305. 306. 306. 306. 306. 306. 306. 306. 307. 307. 307. 307. 307. 307. 307. 307. 307. 307. 307. 310. 311. 311. 311. 311. 311. 312. 312. 312. 312. 312. 312. 312. 312. 312. 312. 312. 312. 312. 312. 312. 312. 312. 312. 312. 312. 312. 313. 313. 313. 313. 313. 315. 315. 315. 315. 315. 315. 315. 315. 315. 315. 316. 317. 317. 317. 317. 317. 317. 317. 317. 317. 320. 320. 320. 320. 320. 320. 320. 320. 321. 321. 321. 321. 321. 321. 321. 321. 321. 321. 321. 321. 321. 321. 322. 322. 322. 322. 322. 322. 322. 322. 322. 324. 324. 324. 324. 324. 324. 324. 324. 324. 324. 324. 330. 330. 330. 331. 331. 331. 331. 332. 332. 332. 332. 332. 332. 332. 332. 332. 332. 332. 333. 333. 333. 333. 333. 333. 336. 342. 344. 344. 344. 344. 344. 360. 362. 362. 362. 364. 364. 364. 368. 368. 368. 369. 371. 371. 371. 371. 371. 371. 371. 371. 371. 371. 371. 371. 371. 371. 371. 371. 372. 372. 372. 374. 374. 374. 374. 386. 386. 386. 387. 387. 387. 387. 388. 388. 389. 389. 389. 389. 389. 389. 389. 389. 389. 390. 390. 390. 391. 391. 391. 391. 391. 391. 391. 391. 391. 391. 391. 391. 391. 391. 391. 391. 393. 393. 393. 393. 393. 394. 395. 395. 395. 395. 395. 395. 395. 395. 395. 395. 395. 395. 395. 395. 395. 395. 396. 396. 396. 396. 396. 396. 396. 398. 398. 398. 398. 398. 398. 398. 398. 398. 398. 398. 398. 398. 398. 398. 398. 398. 398. 398. 398. 399. 399. 399. 399. 399. 399. 399. 399. 402. 402. 403. 403. 403. 403. 403. 403. 403. 403. 403. 404. 404. 404. 404. 404. 404. 404. 404. 404. 404. 404. 404. 404. 404. 404. 404. 404. 404. 404. 404. 404. 404. 404. 405. 405. 405. 405. 405. 405. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 407. 407. 407. 407. 408. 408. 408. 409. 409. 409. 409. 409. 409. 409. 409. 409. 409. 409. 409. 410. 410. 410. 410. 410. 410. 410. 410. 410. 410. 410. 410. 410. 410. 410. 410. 410. 410. 411. 411. 411. 411. 411. 411. 411. 411. 412. 412. 412. 412. 417. 417. 417. 417. 417. 418. 418. 418. 420. 420. 420. 420. 420. 421. 425. 425. 425. 425. 425. 425. 425. 425. 425. 425. 425. 425. 426. 428. 428. 623. 623. 623. 625. 625. 625. 625. 625. 625. 625. 625. 625. 625. 625. 625. 625. 625. 625. 628. 628. 628. 628. 628. 628. 628. 629. 629. 629. 630. 631. 631. 631. 631. 631. 631. 631. 631. 631. 631. 631. 631. 631. 631. 631. 631. 631. 631. 631. 631. 631. 631. 631. 631. 631. 631. 631. 631. 632. 634. 634. 652. 652. 652. 652. 652. 652. 652. 652. 652. 652. 652. 652. 652. 652. 652. 653. 653. 653. 653. 653. 653. 653. 653. 653. 653. 653. 657. 657. 657. 658. 658. 658. 659. 659. 659. 659. 659. 660. 660. 660. 660. 660. 660. 660. 660. 660. 660. 660. 660. 660. 660. 660. 660. 660. 660. 660. 660. 660. 660. 660. 660. 660. 660. 660. 660. 660. 660. 660. 660. 660. 660. 660. 660. 665. 665. 665. 665. 665. 665. 665. 665. 665. 665. 665. 665. 666. 666. 666. 666. 666. 666. 666. 666. 666. 666. 666. 666. 666. 668. 668. 668. 668. 668. 668. 668. 670. 670. 670. 670. 672. 672. 672. 691. 691. 696. 696. 696. 697. 712. 712. 724. 724. 724. 724. 868. 880. 880. 880. 883. 886. 886. 886. 886. 886. 886. 886. 886. 886. 886.1160.1161.1161.1161.1161.1161.1161.1167.1167.1168.1168.1168.1168.1168.1168.1348.1348.1348.1348.1388.1388.1388.1389.1390.1654.1654.1654.1654.1655.1655.1655.1655.1655.1655.1655.1655.1655.1655.1655.1655.1655.1655.1657.1657.1658.1660.1660.1660.1661.1661.1661.1661.1661.1661.1661.1661.1661.1661.1661.1661.1661.1662.1663.1663.1663.1663.1663.1663.1663.1663.1663.1663.1663.1663.1664.1664.1664.1664.1664.1664.1664.1721.1721.1721.1721.1721.1721.1721.1721.1721.1721.1721.1721.1724.1726.1726.1726.1726.1726.1726.1726.1726.1726.1726.1726.1726.1726.1726.1726.1736.1742.1742.1742.1742.1742.1742.1742.1742.1742.1743.1743.1743.1743.1743.1743.1743.1743.1743.1743.1743.1743.1743.1743.1743.1743.1744.1744.1744.1744.1744.1744.1744.1744.1744.1744.1744.1744.1745.1745.1745.1745.1745.1745.1745.1745.1745.1745.1745.1745.1746.1753.1753.1753.1753.1758.1758.1758.1758.1758.1758.1758.1759.1760.1760.1760.1781.1781.1781.1781.1781.1781.1781.1781.1784.1784.2011.2015.2015.2015.2015.2015.2015.2016.2016.2016.2016.2016.2016.2018.2018.2018.2018.2018.2027.2027.2027.2027.2042.2042.2042.2043.2043.2043.2043.2043.2043.2043.2043.2044.2044.2044.2045.2045.2045.2045.2045.2045.2045.2045.2045.2045.2045.2045.2045.2045.2045.2045.2046.2046.2046.2046.2046.2046.2046.2046.2046.2046.2046.2046.2046.2046.2046.2046.2046.2046.2046.2046.2046.2046.2046.2046.2046.2046.2046.2046.2046.2046.2046.2047.2047.2047.2047.2047.2047.2047.2047.2047.2047.2047.2047.2047.2047.2047.2047.2047.2047.2047.2047.2047.2047.2047.2047.2047.2047.2047.2047.2047.2047.2047.2047.2047.2047.2047.2047.2047.2047.2047.2047.2047.2047.2047.2047.2047.2047.2047.2055.2055.2055.2055.2055.2055.2055.2055.2055.2055.2055.2055.2057.2057.2057.2057.2058.2070.2070.2070.2070.2070.2070.2070.2070.2070.2070.2070.2070.2073.2076.2077.2077.2077.2078.2078.2078.2078.2078.2078.2078.2078.2078.2078.2078.2078.2078.2078.2078.2078.2078.2078.2079.2079.2079.2079.2079.2079.2079.2079.2079.2079.2079.2079.2079.2079.2079.2082.2082.2082.2082.2082.2082.2082.2082.2082.2082.2082.2082.2082.2082.2082.2082.2082.2082.2082.2082.2082.2082.2082.2082.2082.2084.2084.2084.2084.2086.2124.2124.2124.2124.2124.2128.2132.2132.2132.2132.2132.2132.2730.2730.2730.2730.2730.2730.2730.2730.2735.2735.2735.2735.2735.2735.2735.2736.2736.2736.2736.2740.2740.2740.2740.2740.2742.2742.2742.2742.2742.2742.2742.2742.2742.2742.2743.2743.2743.2743.2743.2743.2753.2753.2753.2753.2753.2755.2755.2755.2755.2755.2755.2755.2774.2774.2774.2774.2774.2774.2774.2774.2774.2774.2774.2774.2774.2774.2774.2774.2774.2774.2774.2774.2777.2783.2783.2783.2783.2783.2783.2783.2792.2792.2794.2798.2798.2798.2798.2798.2798.2802.2802.2802.2802.2802.2802.2802.2808.2808.2810.2810.2810.2810.2810.2810.2815.2815.2815.2815.2815.2815.2815.2815.2815.2819.2819.2823.2823.2825.2825.2825.2829.2829.2829.2830.2830.2830.2830.2830.2830.2830.2834.2834.2834.2834.2835.2835.2835.2835.2835.2835.2835.2835.2841.2841.2841.2841.2841.2841.2841.2841.2841.2841.2841.2841.2842.2859.2861.2861.2861.2861.2861.2861.2861.2861.2861.2861.2862.2862.2862.2862.2862.2862.2862.2862.2863.2863.2863.2863.2863.2863.2863.2863.2863.2863.2863.2863.2863.FORTRAN STOP Generating faster matching2 spheres for docking Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 1: 45 spheres. 9001.9002.9003.9004.9005.9006.9007.9008.9009.9010.9011.9012.9013.9014.9015.9016.9017.9018.9019.9020.9021.9022.9023.9024.9025.9026.9027.9028.9029.9030.9031.9032.9033.9034.9035.9036.9037.9038.9039.9040.9041.9042.9043.9044.9045.FORTRAN STOP Coloring matching spheres Creating box around spheres Hydrogen solvent excluded grid being made FORTRAN STOP real 20m20.937s user 20m20.329s sys 0m0.195s Heavy solvent excluded grid being made FORTRAN STOP real 26m57.048s user 26m56.324s sys 0m0.233s