usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 26.3762857142857 5.10304761904762 1.89880952380952 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1562 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 885 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 885 Number of spheres polar: 233, nonpolar: 577, out of current total: 885 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 16.37773 36.35972 -3.32387 15.07859 -8.07813 11.80552 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 225 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 185 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 138 Spheres center of coords (x y z): 30.0115384782609 4.66771253623189 -0.482486086956522 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.85197763494575 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 21