usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 26.3762857142857 5.10304761904762 1.89880952380952 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2058 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 969 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 969 Number of spheres polar: 315, nonpolar: 590, out of current total: 969 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 16.38367 36.34100 -4.80939 15.10050 -8.02840 11.88620 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 465 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 392 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 321 Spheres center of coords (x y z): 30.0914942679128 5.36166869158879 -0.630897009345794 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.26576946447959 Final number of output spheres is: 60 Number of polar spheres: 34 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 21