Creating binding-site residue list Creating molecular surface real 0m1.904s user 0m0.299s sys 0m0.190s Creating sphgen spheres Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 0:1610 spheres. 304. 304. 304. 304. 304. 305. 305. 305. 305. 305. 305. 305. 305. 305. 305. 305. 305. 305. 305. 305. 305. 305. 305. 305. 305. 305. 305. 305. 305. 305. 305. 305. 305. 305. 305. 338. 338. 338. 338. 338. 338. 338. 338. 338. 352. 352. 352. 352. 354. 354. 354. 354. 354. 354. 354. 354. 354. 355. 355. 355. 355. 356. 356. 356. 356. 356. 356. 356. 356. 356. 356. 356. 356. 356. 356. 356. 356. 356. 356. 356. 356. 356. 356. 356. 357. 357. 357. 357. 357. 357. 357. 357. 357. 357. 357. 359. 359. 359. 366. 366. 366. 366. 366. 366. 375. 375. 375. 375. 375. 375. 375. 379. 379. 379. 379. 380. 380. 380. 380. 380. 380. 380. 380. 380. 380. 380. 380. 380. 380. 380. 380. 381. 381. 381. 381. 381. 381. 381. 381. 381. 381. 381. 381. 381. 381. 381. 381. 381. 381. 383. 383. 385. 385. 385. 385. 385. 385. 386. 387. 387. 387. 387. 387. 387. 387. 387. 388. 388. 388. 388. 388. 388. 388. 388. 388. 388. 388. 388. 388. 388. 388. 388. 388. 388. 421. 421. 428. 428. 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922.1049.1050.1052.1054.1056.1056.1056.1057.1057.1057.1057.1058.1058.1058.1058.1058.1058.1058.1058.1058.1058.1058.1058.1058.1058.1058.1058.1058.1058.1059.1059.1059.1059.1059.1059.1059.1059.1059.1059.1060.1060.1060.1060.1060.1060.1060.1060.1060.1060.1060.1060.1060.1060.1060.1060.1060.1060.1060.1061.1061.1061.1061.1061.1061.1061.1061.1061.1061.1061.1061.1061.1061.1062.1062.1062.1062.1062.1062.1062.1062.1062.1062.1062.1062.1062.1062.1062.1062.1063.1063.1064.1065.1066.1066.1066.1066.1066.1066.1066.1066.1066.1066.1066.1066.1066.1066.1066.1067.1067.1067.1067.1067.1067.1067.1067.1067.1067.1067.1067.1067.1067.1067.1067.1067.1067.1067.1067.1067.1067.1067.1067.1067.1067.1067.1067.1067.1067.1067.1067.1067.1069.1069.1069.1069.1070.1070.1070.1070.1070.1070.1070.1070.1070.1070.1070.1070.1070.1070.1070.1070.1070.1070.1070.1070.1070.1070.1070.1070.1070.1070.1070.1070.1070.1070.1070.1070.1070.1070.1070.1070.1070.1071.1072.1072.1072.1072.1072.1072.1072.1072.1072.1072.1072.1072.1072.1072.1072.1072.1072.1072.1075.1075.1079.1079.1079.1079.1079.1079.1079.1079.1079.1079.1079.1079.1079.1079.1079.1079.1079.1079.1079.1079.1079.1079.1079.1079.1079.1079.1080.1080.1080.1080.1080.1080.1080.1080.1080.1080.1080.1080.1080.1080.1080.1080.1080.1080.1080.1081.1084.1084.1084.1084.1084.1086.1086.1086.1087.1087.1089.1089.1089.1089.1089.1092.1093.1100.1100.1100.1100.1101.1101.1101.1101.1101.1101.1101.1101.1101.1102.1102.1105.1105.1105.1105.1106.1106.1106.1106.1106.1106.1106.1106.1106.1106.1106.1107.1108.1108.1108.1108.1108.1108.1108.1108.1108.1108.1108.1110.1110.1110.1111.1111.1111.1111.1111.1111.1111.1111.1111.1118.1118.1118.1118.1118.1118.1118.1120.1121.1125.1125.1127.1128.1128.1128.1128.1128.1128.1128.1128.1128.1128.1133.1133.1134.1134.1134.1134.1134.1134.1135.1135.1135.1135.1135.1135.1135.1135.1135.1135.1135.1135.1135.1135.1135.1136.1136.1136.1136.1136.1136.1136.1136.1136.1138.1138.1141.1141.1141.1141.1141.1141.1141.1141.1141.1141.1141.1141.1141.1141.1141.1141.1141.1141.1141.1141.1141.1141.1141.1141.1141.1141.1141.1141.1141.1141.1141.1141.1141.1141.1141.1143.1143.1143.1143.1143.1143.1144.1144.1146.1146.1146.1147.1147.1147.1147.1147.1147.1147.1147.1147.1147.1152.1152.1153.1153.1153.1159.1159.1159.1159.1159.1159.1159.1159.1159.1159.1159.1159.1160.1160.1160.1160.1160.1160.1160.1160.1161.1161.1161.1161.1161.1165.1165.1168.1168.1169.1169.1169.1169.1169.1169.1169.1169.1169.1169.1174.1174.1174.1174.1174.1174.1174.1174.1174.1174.1174.1174.1174.1191.1191.1191.1191.1191.1191.1191.1191.1192.1193.1193.1212.1378.1380.1380.1380.1382.1382.1405.1405.1414.1414.1414.1414.1417.1417.1417.1417.1417.1417.1417.1417.1417.1417.1418.1418.1419.1443.1444.1444.1444.1444.1444.1444.1444.1444.1445.1445.1445.1445.1445.1445.1445.1445.1445.1445.1445.1445.1445.1445.1445.1445.1445.1445.1445.1445.1445.1445.1445.1445.1445.1445.1445.1445.1445.1445.1445.1445.1445.1445.1455.1455.1455.1455.1455.1455.1455.1455.1455.1455.1455.1455.1455.1455.1455.1455.1455.1455.1456.1456.1456.1456.1456.1456.1456.1456.1456.1456.1456.1456.1456.1474.1474.1475.1475.1477.1477.1477.1477.1477.1477.1477.1477.1477.1477.1477.1477.1478.1478.1478.1478.1478.1478.1478.1478.1478.1478.1479.1479.1479.1479.1479.1479.1479.1479.1479.1479.1479.1479.1479.1479.1479.1479.1479.1479.1484.1485.1485.1485.1485.1485.1486.1486.1486.1486.1486.1486.1486.1486.1486.1486.1486.1486.1486.1486.1486.1486.1486.1486.1487.1487.1487.1487.1487.1487.1487.1487.1487.1487.1487.1487.1487.1487.1487.1497.1499.1499.1499.1499.1499.1499.1499.1499.1499.1499.1499.1499.1499.1499.1499.1499.1499.1499.1499.1500.1500.1500.1500.1500.1500.1500.1500.1500.1501.1501.1501.1501.1501.1501.1501.1501.1501.1501.1501.1501.1501.1501.1501.1501.1501.1501.1501.1501.1501.1501.1501.1501.1501.1501.1501.1501.1501.1501.1501.1501.1508.1508.1508.1508.1508.1508.1509.1509.1509.1509.1570.1574.1574.1574.1574.1574.1574.1574.1574.1574.1574.1574.1574.1574.1574.1574.1574.1574.1574.1574.1574.1574.1574.1575.1575.1575.1575.1575.1575.1575.1575.1575.1575.1575.1575.1575.1575.1575.1575.1575.1575.1576.1576.1576.1576.1576.1576.1576.1576.1576.1576.1576.1576.1576.1576.1576.1576.1576.1576.1576.1576.1576.1576.1576.1576.1576.1576.1576.1576.1576.1576.1576.1576.1576.1576.1576.1576.1576.1576.1576.1576.1576.1576.1576.1576.1577.1577.1577.1577.1604.1604.1604.1604.1604.1604.1604.1605.1605.1606.1606.1606.1606.1606.1606.1606.1606.1606.1606.1606.1606.1606.1607.1607.1607.1607.1607.1607.1607.1607.1608.1608.1608.1608.1608.1608.1608.1609.1609.1609.1609.1609.1609.1609.1610.1610.1610.1610.1610.1610.1610.1610.1610.1610.1616.1617.1617.1617.1617.1617.1617.1617.1617.1617.1617.1617.1617.1617.1617.1617.1617.1617.1617.1617.1617.1617.1617.1617.1617.1617.1617.1617.1617.1617.1617.1617.1617.1617.1617.1617.1617.1617.1617.1617.1617.1617.1617.1617.1619.1622.1622.1622.1622.1622.1622.1622.1622.1622.1622.1622.1622.1630.1630.1631.1631.1631.1631.1631.1632.1632.1632.1632.1632.1632.1638.1639.1639.1639.1639.1639.1639.1639.1640.1640.1640.1640.1640.1640.1640.1640.1640.1640.1640.1640.1640.1640.1640.1640.1640.1640.1640.1640.1640.1640.1640.1640.1640.1640.1640.1641.1641.1646.1648.1648.1649.1650.1650.1651.1653.1653.1654.1654.1654.1654.1654.1660.1660.1660.1662.1662.1662.1662.1662.1662.1662.1662.1663.1667.1667.1667.1667.1667.1667.1667.1667.1667.1669.1675.1675.1676.1676.1676.1676.1676.1677.1677.1679.1679.1683.1683.1683.1683.1684.1684.1684.1684.1684.1684.1684.1684.1684.1684.1684.1684.1684.1684.1684.1684.1684.1684.1684.FORTRAN STOP Generating faster matching2 spheres for docking Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 1: 45 spheres. 9001.9002.9003.9004.9005.9006.9007.9008.9009.9010.9011.9012.9013.9014.9015.9016.9017.9018.9019.9020.9021.9022.9023.9024.9025.9026.9027.9028.9029.9030.9031.9032.9033.9034.9035.9036.9037.9038.9039.9040.9041.9042.9043.9044.9045.FORTRAN STOP Coloring matching spheres Creating box around spheres Hydrogen solvent excluded grid being made FORTRAN STOP real 19m3.946s user 17m26.689s sys 0m0.568s Heavy solvent excluded grid being made FORTRAN STOP real 24m36.182s user 24m32.853s sys 0m0.114s