Creating binding-site residue list Creating molecular surface real 0m1.411s user 0m0.254s sys 0m0.151s Creating sphgen spheres Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 0:1611 spheres. 317. 317. 317. 318. 318. 320. 320. 368. 368. 371. 371. 388. 389. 389. 389. 389. 390. 390. 390. 390. 390. 390. 392. 392. 392. 392. 392. 392. 392. 392. 392. 392. 392. 392. 392. 392. 392. 392. 392. 392. 392. 392. 392. 392. 392. 392. 392. 392. 392. 392. 392. 392. 392. 392. 392. 392. 392. 392. 392. 392. 392. 392. 392. 395. 395. 395. 395. 397. 397. 397. 397. 399. 399. 399. 399. 399. 399. 399. 399. 399. 399. 399. 399. 399. 399. 399. 399. 399. 399. 399. 399. 399. 400. 400. 400. 400. 400. 400. 400. 400. 400. 400. 400. 400. 400. 400. 400. 400. 400. 400. 400. 400. 400. 400. 400. 401. 401. 401. 401. 401. 441. 441. 441. 441. 441. 441. 441. 441. 441. 441. 441. 441. 508. 508. 508. 508. 508. 508. 509. 509. 509. 509. 509. 509. 509. 509. 509. 509. 509. 509. 509. 509. 509. 509. 509. 509. 509. 509. 509. 509. 509. 509. 509. 511. 511. 511. 514. 514. 514. 514. 514. 515. 515. 515. 515. 515. 515. 515. 515. 515. 515. 515. 515. 517. 517. 517. 517. 523. 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964.1091.1091.1091.1091.1091.1091.1091.1092.1092.1092.1092.1092.1092.1094.1094.1094.1094.1096.1096.1098.1098.1099.1099.1099.1099.1100.1100.1100.1100.1100.1100.1100.1100.1100.1100.1100.1100.1100.1100.1100.1100.1100.1100.1100.1100.1100.1100.1100.1100.1100.1100.1100.1100.1100.1101.1101.1101.1101.1101.1101.1101.1102.1102.1102.1102.1102.1102.1102.1102.1102.1102.1102.1102.1102.1102.1102.1102.1102.1102.1103.1103.1103.1103.1103.1103.1103.1103.1103.1103.1103.1103.1104.1104.1104.1104.1104.1104.1104.1104.1104.1104.1104.1104.1104.1104.1104.1105.1105.1105.1105.1105.1105.1107.1107.1108.1108.1108.1108.1108.1108.1108.1108.1108.1108.1108.1108.1108.1108.1109.1109.1109.1109.1109.1109.1109.1109.1109.1109.1109.1109.1109.1109.1109.1109.1109.1109.1109.1109.1109.1109.1109.1109.1109.1109.1109.1109.1109.1109.1109.1109.1109.1109.1111.1112.1112.1112.1112.1112.1112.1112.1112.1112.1112.1112.1112.1112.1114.1114.1114.1114.1114.1114.1114.1114.1114.1114.1114.1114.1114.1114.1114.1114.1114.1114.1114.1114.1114.1114.1114.1116.1119.1122.1122.1122.1122.1122.1122.1122.1122.1122.1122.1122.1122.1124.1124.1124.1124.1124.1124.1124.1124.1124.1124.1124.1124.1124.1124.1124.1124.1124.1124.1124.1124.1124.1124.1124.1124.1124.1124.1124.1124.1124.1124.1124.1124.1126.1126.1126.1126.1126.1126.1126.1126.1126.1126.1126.1126.1126.1126.1126.1126.1126.1126.1126.1130.1130.1130.1130.1130.1130.1130.1130.1130.1130.1130.1130.1130.1130.1130.1130.1132.1132.1132.1132.1132.1133.1133.1135.1135.1136.1144.1146.1146.1147.1147.1147.1147.1148.1148.1148.1148.1148.1148.1148.1149.1149.1150.1150.1150.1150.1150.1150.1150.1150.1150.1150.1150.1150.1151.1152.1152.1152.1152.1152.1152.1152.1152.1152.1152.1152.1155.1155.1155.1155.1155.1162.1162.1162.1165.1165.1165.1167.1169.1169.1169.1169.1169.1169.1172.1172.1172.1172.1172.1177.1177.1177.1177.1177.1179.1179.1180.1180.1180.1180.1180.1180.1180.1180.1180.1180.1180.1180.1180.1180.1180.1180.1182.1182.1182.1182.1182.1182.1182.1182.1182.1182.1185.1185.1185.1185.1185.1185.1185.1185.1185.1185.1185.1185.1185.1185.1185.1185.1185.1185.1185.1185.1185.1185.1185.1185.1185.1187.1187.1187.1187.1190.1190.1190.1190.1190.1190.1190.1190.1190.1191.1191.1191.1191.1191.1191.1191.1191.1191.1191.1197.1197.1203.1203.1203.1204.1204.1205.1205.1205.1205.1205.1205.1205.1205.1205.1205.1209.1210.1210.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1212.1212.1212.1212.1212.1212.1212.1212.1212.1212.1212.1212.1212.1212.1212.1212.1212.1212.1212.1215.1217.1217.1217.1217.1217.1217.1217.1217.1217.1218.1218.1218.1218.1218.1234.1234.1238.1238.1238.1240.1240.1241.1241.1247.1247.1247.1247.1248.1248.1248.1248.1248.1436.1438.1438.1438.1438.1438.1438.1438.1459.1459.1459.1473.1474.1474.1474.1474.1474.1474.1491.1495.1495.1498.1499.1499.1499.1499.1499.1499.1499.1499.1501.1501.1501.1501.1501.1501.1501.1501.1501.1501.1501.1501.1501.1501.1510.1510.1510.1510.1510.1510.1510.1510.1510.1510.1510.1510.1510.1510.1510.1512.1512.1512.1512.1512.1512.1512.1512.1512.1512.1512.1512.1512.1518.1519.1519.1519.1519.1519.1519.1519.1519.1519.1520.1520.1520.1520.1520.1520.1520.1520.1520.1520.1527.1527.1527.1527.1527.1527.1527.1533.1533.1533.1533.1533.1533.1533.1534.1534.1534.1534.1534.1535.1535.1535.1535.1535.1535.1535.1535.1535.1535.1535.1535.1535.1535.1535.1535.1535.1535.1535.1535.1535.1535.1541.1541.1542.1542.1542.1542.1542.1542.1542.1542.1542.1542.1542.1542.1542.1542.1542.1542.1542.1542.1543.1543.1543.1543.1543.1562.1562.1564.1564.1564.1564.1564.1564.1566.1567.1567.1567.1567.1567.1567.1567.1567.1567.1567.1567.1629.1629.1629.1632.1632.1632.1632.1632.1632.1632.1632.1632.1632.1632.1632.1632.1632.1632.1632.1632.1632.1632.1632.1632.1633.1633.1633.1633.1633.1633.1633.1633.1634.1634.1634.1634.1634.1634.1634.1634.1634.1634.1634.1634.1634.1634.1634.1634.1634.1634.1634.1634.1634.1634.1634.1634.1634.1634.1634.1634.1634.1634.1634.1634.1635.1635.1635.1635.1635.1635.1635.1635.1635.1635.1635.1635.1635.1635.1635.1635.1635.1635.1635.1635.1635.1636.1636.1636.1636.1636.1636.1636.1636.1636.1636.1636.1636.1636.1636.1636.1636.1636.1636.1636.1636.1636.1636.1636.1636.1636.1636.1636.1636.1636.1636.1636.1647.1647.1651.1651.1651.1651.1651.1651.1652.1652.1652.1652.1652.1652.1652.1652.1652.1652.1660.1660.1660.1660.1660.1660.1660.1660.1660.1660.1660.1660.1660.1661.1662.1662.1662.1662.1662.1662.1662.1662.1662.1662.1662.1662.1662.1662.1662.1662.1662.1662.1662.1662.1662.1662.1662.1662.1662.1662.1662.1662.1662.1663.1663.1663.1664.1664.1670.1670.1670.1670.1670.1670.1670.1670.1670.1670.1670.1670.1670.1670.1671.1671.1671.1671.1671.1671.1672.1672.1672.1672.1672.1672.1672.1672.1672.1672.1672.1672.1672.1672.1672.1672.1672.1672.1672.1672.1674.1677.1679.1679.1679.1679.1679.1679.1679.1679.1679.1679.1679.1679.1679.1679.1679.1679.1679.1679.1679.1679.1679.1679.1679.1679.1679.1680.1680.1680.1680.1680.1680.1680.1680.1680.1680.1680.1680.1680.1680.1680.1680.1680.1680.1680.1680.1680.1688.1688.1693.1694.1694.1694.1694.1694.1694.1695.1695.1695.1695.1695.1695.1695.1695.1695.1695.1695.1695.1695.1695.1695.1695.1695.1695.1695.1695.1695.1695.1695.1695.1695.1695.1696.1701.1701.1701.1701.1701.1701.1701.1701.1701.1701.1703.1705.1707.1707.1707.1707.1707.1716.1716.1717.1717.1718.1718.1718.1718.1732.1732.1734.1734.FORTRAN STOP Generating faster matching2 spheres for docking Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 1: 45 spheres. 9001.9002.9003.9004.9005.9006.9007.9008.9009.9010.9011.9012.9013.9014.9015.9016.9017.9018.9019.9020.9021.9022.9023.9024.9025.9026.9027.9028.9029.9030.9031.9032.9033.9034.9035.9036.9037.9038.9039.9040.9041.9042.9043.9044.9045.FORTRAN STOP Coloring matching spheres Creating box around spheres Hydrogen solvent excluded grid being made FORTRAN STOP real 18m49.477s user 17m31.086s sys 0m0.134s Heavy solvent excluded grid being made FORTRAN STOP real 25m30.108s user 24m59.653s sys 0m0.133s