Creating binding-site residue list Creating molecular surface real 0m1.438s user 0m0.220s sys 0m0.144s Creating sphgen spheres Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 0:1145 spheres. 92. 92. 92. 92. 92. 92. 92. 92. 92. 92. 92. 92. 92. 93. 95. 95. 95. 95. 95. 98. 98. 98. 98. 98. 99. 102. 104. 104. 104. 104. 104. 104. 104. 104. 104. 104. 104. 104. 104. 104. 104. 104. 104. 104. 104. 104. 108. 108. 178. 178. 178. 178. 185. 185. 187. 187. 187. 188. 188. 188. 188. 188. 188. 193. 193. 193. 193. 193. 193. 193. 193. 193. 193. 193. 193. 195. 195. 198. 198. 198. 198. 198. 198. 198. 198. 198. 198. 198. 198. 198. 198. 198. 198. 198. 198. 198. 198. 204. 206. 206. 206. 206. 206. 206. 213. 213. 213. 213. 213. 213. 213. 218. 218. 219. 219. 219. 219. 222. 226. 226. 226. 226. 226. 226. 226. 229. 229. 230. 230. 230. 231. 231. 231. 231. 231. 231. 241. 241. 241. 241. 241. 241. 241. 241. 241. 241. 241. 241. 247. 247. 247. 247. 247. 247. 249. 249. 250. 250. 250. 250. 251. 251. 251. 251. 251. 251. 251. 251. 251. 251. 251. 259. 259. 259. 259. 259. 259. 261. 261. 267. 267. 269. 269. 269. 269. 269. 269. 270. 270. 278. 278. 278. 279. 279. 289. 289. 289. 289. 289. 289. 289. 289. 289. 290. 290. 290. 290. 290. 290. 290. 290. 290. 290. 290. 290. 290. 291. 291. 292. 292. 292. 292. 292. 292. 292. 292. 292. 292. 292. 292. 292. 292. 292. 292. 292. 292. 292. 292. 292. 292. 292. 292. 292. 292. 292. 292. 297. 299. 299. 299. 299. 299. 299. 299. 300. 300. 300. 300. 300. 300. 323. 324. 324. 324. 324. 324. 324. 324. 324. 324. 324. 324. 324. 324. 324. 324. 324. 324. 324. 523. 523. 523. 523. 523. 523. 523. 523. 523. 523. 523. 523. 523. 523. 523. 526. 526. 526. 526. 526. 526. 526. 526. 526. 526. 526. 526. 536. 536. 536. 536. 536. 540. 540. 541. 546. 548. 548. 548. 548. 548. 548. 548. 548. 548. 548. 548. 548. 548. 549. 549. 549. 549. 549. 549. 550. 551. 551. 551. 551. 551. 551. 551. 551. 551. 551. 551. 551. 551. 551. 551. 551. 551. 551. 551. 551. 551. 551. 551. 551. 551. 551. 551. 556. 558. 558. 558. 558. 558. 558. 558. 561. 563. 563. 563. 563. 563. 563. 563. 564. 564. 565. 565. 565. 566. 566. 566. 566. 566. 566. 566. 566. 566. 566. 566. 566. 566. 566. 566. 566. 566. 566. 566. 566. 566. 566. 566. 567. 567. 567. 567. 568. 568. 568. 574. 574. 574. 575. 576. 576. 576. 576. 576. 576. 576. 592. 592. 592. 592. 592. 592. 592. 592. 592. 592. 592. 592. 592. 592. 592. 592. 592. 592. 592. 592. 592. 592. 592. 592. 592. 592. 592. 592. 592. 592. 592. 592. 592. 592. 592. 592. 592. 592. 592. 592. 592. 592. 592. 592. 592. 592. 592. 597. 611. 611. 611. 611. 611. 611. 611. 611. 611. 611. 611. 611. 611. 611. 624. 624. 624. 624. 624. 624. 624. 624. 624. 624. 624. 624. 624. 625. 625. 625. 625. 625. 625. 625. 625. 625. 625. 625. 625. 625. 625. 625. 625. 625. 626. 626. 627. 627. 627. 628. 628. 628. 628. 628. 628. 628. 628. 628. 628. 629. 629. 629. 629. 629. 629. 629. 629. 629. 629. 629. 629. 634. 634. 634. 634. 634. 634. 634. 709. 709. 709. 709. 709. 709. 709. 709. 709. 709. 709. 709. 709. 709. 709. 709. 709. 718. 719. 719. 719. 725. 729. 729. 729. 729. 729. 729. 729. 729. 729. 729. 731. 731. 731. 731. 731. 731. 731. 731. 731. 731. 731. 731. 731. 731. 731. 731. 734. 734. 734. 741. 741. 741. 741. 741. 741. 741. 741. 741. 742. 742. 742. 742. 742. 742. 742. 742. 742. 742. 742. 742. 742. 742. 742. 742. 743. 743. 743. 743. 743. 743. 743. 743. 744. 744. 744. 744. 744. 853. 853. 853. 853. 853. 853. 853. 853. 853. 854. 854. 854. 855. 855. 856. 856. 857. 857. 857. 857. 857. 858. 858. 858. 858. 859. 861. 861. 861. 861. 861. 861. 862. 862. 862. 862. 870. 870. 870. 870. 870. 870. 870. 870. 870. 870. 875. 875. 875. 875. 875. 875. 875. 875. 875. 875. 875. 875. 875. 875. 875. 890. 890. 893. 895. 895. 895. 895. 895. 895. 896. 896. 896. 896. 897. 897. 897. 897. 897. 897. 897. 897. 897. 897. 897. 897. 897. 897. 897. 897. 897. 925. 928. 952. 952. 952. 952.1469.1470.1470.1470.1470.1470.1471.1471.1475.1475.1475.1475.1475.1475.1480.1480.1480.1481.1481.1482.1482.1482.1482.1482.1482.1482.1482.1486.1486.1486.1486.1488.1488.1491.1491.1491.1491.1491.1491.1492.1492.1492.1492.1492.1492.1492.1492.1492.1492.1492.1492.1492.1492.1492.1492.1492.1492.1492.1492.1492.1493.1493.1493.1493.1493.1493.1493.1493.1493.1493.1493.1494.1494.1495.1495.1495.1495.1495.1495.1495.1502.1503.1503.1503.1503.1503.1503.1512.1512.1512.1512.1512.1512.1512.1512.1512.1512.1512.1512.1512.1512.1512.1512.1512.1512.1512.1512.1512.1512.1513.1513.1513.1513.1515.1515.1515.1518.1518.1518.1518.1518.1518.1518.1518.1518.1519.1519.1519.1519.1519.1519.1519.1519.1519.1519.1520.1520.1520.1520.1520.1520.1520.1520.1520.1522.1522.1522.1522.1522.1522.1522.1522.1522.1522.1522.1522.1522.1522.1522.1522.1522.1522.1522.1522.1522.1522.1524.1524.1524.1529.1529.1529.1529.1530.1530.1530.1530.1530.1530.1530.1530.1530.1530.1530.1532.1532.1532.1532.1532.1532.1532.1532.1532.1532.1532.1532.1532.1532.1533.1533.1533.1533.1533.1533.1533.1538.1538.1538.1538.1538.1538.1538.1538.1538.1538.1538.1538.1538.1538.1538.1538.1539.1539.1539.1539.1539.1539.1539.1539.1539.1539.1539.1548.1548.1548.1548.1548.1548.1548.1548.1548.1549.1550.1550.1550.1550.1550.1550.1551.1556.1556.1556.1556.1556.1556.1556.1556.1556.1556.1556.1556.1556.1556.1557.1557.1557.1557.1558.1558.1558.1558.1558.1559.1559.1559.1559.1559.1559.1559.1559.1559.1559.1559.1559.1559.1559.1561.1564.1564.1564.1564.1566.1566.1566.1566.1567.1567.1574.1575.1575.1575.1575.1575.1575.1575.1575.1575.1575.1575.1575.1575.1575.1575.1575.1596.1596.1597.1597.1598.1598.1598.1598.1598.1640.1641.1641.1641.1641.1641.1641.1641.1641.1641.1641.1641.1641.1641.1641.1641.1641.1641.1641.1641.1641.1641.1641.1641.1642.1643.1643.1643.1643.1643.1643.1644.1644.1644.1644.1644.1644.1644.1644.1645.1647.1647.1647.1647.1648.1648.1648.1648.1649.1649.1649.1657.1657.1657.1662.1662.1662.1662.1662.1662.1682.1682.1683.1683.1683.1683.1683.1683.1683.1683.1683.1683.1683.1683.1688.1688.1705.1705.1705.1705.1737.1737.1737.1737.1742.1742.FORTRAN STOP Generating faster matching2 spheres for docking Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 1: 45 spheres. 9001.9002.9003.9004.9005.9006.9007.9008.9009.9010.9011.9012.9013.9014.9015.9016.9017.9018.9019.9020.9021.9022.9023.9024.9025.9026.9027.9028.9029.9030.9031.9032.9033.9034.9035.9036.9037.9038.9039.9040.9041.9042.9043.9044.9045.FORTRAN STOP Coloring matching spheres Creating box around spheres Hydrogen solvent excluded grid being made FORTRAN STOP real 16m20.641s user 15m32.455s sys 0m0.285s Heavy solvent excluded grid being made FORTRAN STOP real 22m9.702s user 22m8.182s sys 0m0.129s