Running Epik version     2.1209
Epik. Copyright Schrodinger, LLC. All rights reserved.

Input file name:                        A.mae
Output file name:                       B.mae
Structure adjustment calculation requested.
  Target pH set to 7.000
pHt tolerance set to 1.000000e+00
Epik minmium tautomer probability set to 2.000000e-01

Adjusting structures for pH 7.000000e+00 and minimum probability 1.000000e-01
Solvent model name:                     water
Using Incremental parameter file version: 1.0004
Jobcontrol is not being used for this specific Epik calculation.
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Processing Input Structure #1
        Title: TEMP00000001
                                              Calculated pKas
                                                 Conjugate
                                          Atom   Acid/Base  pKa
. . . . . . . . . . . . . . . . . . . . . . .
Variation: 1
                                            41   Conj_Acid 14.92
                                            42   Conj_Acid 14.91
                                             8   Conj_Base -1.10
                                            17   Conj_Base -2.63
                                            30   Conj_Acid  8.99
                                            31   Conj_Acid  8.99
                                            64   Conj_Acid  8.99
                                             7   Conj_Base  2.96
 pKa penalty:                                 0.01 kcal/mol
     Charging penalty:                        0.01 kcal/mol
     Neutralization penalty:                  0.00 kcal/mol
 Overall Penalty (tautomerization included): -0.00 kcal/mol
 Total Charge: 1
---------------------------
Processing Input Structure #2
        Title: TEMP00000002
                                              Calculated pKas
                                                 Conjugate
                                          Atom   Acid/Base  pKa
. . . . . . . . . . . . . . . . . . . . . . .
Variation: 1
                                            41   Conj_Acid 14.92
                                            42   Conj_Acid 14.91
                                             8   Conj_Base -1.10
                                            17   Conj_Base -2.63
                                            30   Conj_Acid  8.99
                                            31   Conj_Acid  8.99
                                            64   Conj_Acid  8.99
                                             7   Conj_Base  2.96
 pKa penalty:                                 0.01 kcal/mol
     Charging penalty:                        0.01 kcal/mol
     Neutralization penalty:                  0.00 kcal/mol
 Overall Penalty (tautomerization included): -0.00 kcal/mol
 Total Charge: 1
---------------------------