usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): 24.3466785714286 12.437 22.659 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1391 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 676 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 639 Number of spheres polar: 211, nonpolar: 200, out of current total: 639 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 14.36604 34.33448 2.82979 22.40157 12.75161 32.62633 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 273 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 236 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 205 Spheres center of coords (x y z): 21.5505504878049 14.0166814146341 22.2555273170732 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.91043337072023 Final number of output spheres is: 45 Number of polar spheres: 16 Number of nonpolar spheres: 12 Number of spheres that are near neither polar nor nonpolar receptor atoms: 17 Final number of spheres that are from crystallographic ligand: 28