There are 28 ligand heavy atoms Ligand center of coords (x y z): 24.3466785714286 12.437 22.659 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 12009 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 8302 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 8302 Number of spheres polar: 5455, nonpolar: 2057, out of current total: 8302 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 12.35500 36.34660 0.45680 24.43220 10.66100 34.52720 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 1031 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 578 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 553 Spheres center of coords (x y z): 22.8404162748644 16.6424104882459 21.3880014466546 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 9.3344600025965 Final number of output spheres is: 120 Number of polar spheres: 82 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 28