usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): 1.16161111111111 28.3933333333333 8.56983333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1254 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 747 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 747 Number of spheres polar: 262, nonpolar: 351, out of current total: 747 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -8.58742 11.14063 18.42107 38.36981 -1.39800 18.53969 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 418 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 356 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 291 Spheres center of coords (x y z): 3.36605367697595 24.813227766323 8.93878347079038 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.70322776678799 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 36 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 18