starting doligdir.csh name of SYBYL ASCII (MOL2) file? xtal-lig.mol2 output option? 1:pdb-based with charges and vdw types ("extended PDB") for dock3 single mode or scoreopt 2:database for dock3 search 3:1 & 2 4:pdb-based with charges; for dock2.1 5:2 & 4 6:just standard pdb, no charges 7:parm file for chemgrid (single molecule ONLY), to make grids for "positive docking" 1 name of pdb output file? xtal-lig.xpdb doligdir.csh ended normally