usefragsph not on
There are 23 ligand heavy atoms
Ligand center of coords (x y z): 38.4802608695652 9.57765217391304 -11.6282173913043
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1618
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 818
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 818
Number of spheres polar: 267, nonpolar: 351, out of current total: 818
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 28.72234 48.46237 -0.35474 19.54500 -21.52252 -1.66466
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 452
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 394
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 343
Spheres center of coords (x y z): 37.6020239067056 9.80758326530612 -8.31266072886297
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.80319789495084
Final number of output spheres is: 60
Number of polar spheres: 31
Number of nonpolar spheres: 28
Number of spheres that are near neither polar nor nonpolar receptor atoms: 1
Final number of spheres that are from crystallographic ligand: 23