usefragsph not on There are 30 ligand heavy atoms Ligand center of coords (x y z): 1.90203333333333 25.4358666666667 8.14436666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1411 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 849 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 849 Number of spheres polar: 281, nonpolar: 396, out of current total: 849 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -8.01096 11.82921 15.57082 35.42714 -1.84389 18.09789 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 273 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 225 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 190 Spheres center of coords (x y z): 2.13435489473684 23.5855456842105 9.13064294736842 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.49781273186134 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 30