usefragsph not on
There are 28 ligand heavy atoms
Ligand center of coords (x y z): 5.37360714285714 43.745 50.9359285714286
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1223
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 769
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 766
Number of spheres polar: 211, nonpolar: 335, out of current total: 766
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.38280 15.36788 33.75835 53.64051 40.96520 60.93208
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 453
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 395
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 371
Spheres center of coords (x y z): 3.3613586522911 42.5871201078167 50.059774690027
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.52270432432398
Final number of output spheres is: 60
Number of polar spheres: 21
Number of nonpolar spheres: 36
Number of spheres that are near neither polar nor nonpolar receptor atoms: 3
Final number of spheres that are from crystallographic ligand: 28