usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 1.65445454545455 6.92177272727273 26.7334545454545 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1684 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 960 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 960 Number of spheres polar: 355, nonpolar: 462, out of current total: 960 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -8.32166 11.53733 -3.07347 16.87204 16.73952 36.70474 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 477 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 411 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 338 Spheres center of coords (x y z): 2.18715736686391 10.4512732840237 26.2319122189349 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.99401519148193 Final number of output spheres is: 60 Number of polar spheres: 30 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 22