usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 103.787681818182 100.821863636364 78.5269545454545 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1348 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 934 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 934 Number of spheres polar: 340, nonpolar: 383, out of current total: 934 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 93.95462 113.77945 90.84752 110.79341 68.61652 88.32803 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 303 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 240 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 224 Spheres center of coords (x y z): 101.911049151786 100.802089598214 77.6788313839286 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.8697320652511 Final number of output spheres is: 45 Number of polar spheres: 19 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 22