usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 103.787681818182 100.821863636364 78.5269545454545 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1348 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 934 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 934 Number of spheres polar: 340, nonpolar: 383, out of current total: 934 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 93.95462 113.77945 90.84752 110.79341 68.61652 88.32803 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 508 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 425 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 397 Spheres center of coords (x y z): 101.775224811083 100.552747052897 77.9694977581864 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.68373364337071 Final number of output spheres is: 60 Number of polar spheres: 29 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 22