usefragsph not on There are 30 ligand heavy atoms Ligand center of coords (x y z): 119.3223 -82.9147 93.2888333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1333 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 755 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 751 Number of spheres polar: 204, nonpolar: 316, out of current total: 751 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 109.42560 129.29250 -92.78152 -72.91900 83.36395 102.92516 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 282 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 230 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 195 Spheres center of coords (x y z): 119.484942769231 -80.2989956923077 91.4175948205128 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.11530995583906 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 30