usefragsph not on There are 31 ligand heavy atoms Ligand center of coords (x y z): -31.9330967741936 -19.7007741935484 52.4091935483871 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1522 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 956 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 956 Number of spheres polar: 262, nonpolar: 410, out of current total: 956 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -41.86323 -24.43999 -29.37000 -9.80525 42.41750 62.38320 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 320 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 268 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 241 Spheres center of coords (x y z): -34.7154784232365 -19.9344712448133 53.9910358921162 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.74946776985568 Final number of output spheres is: 45 Number of polar spheres: 18 Number of nonpolar spheres: 19 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 31