usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 24.79215625 27.32021875 28.9244375 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1425 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 804 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 804 Number of spheres polar: 251, nonpolar: 318, out of current total: 804 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 14.79717 34.74197 17.33580 37.30369 18.96455 38.90478 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 466 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 401 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 377 Spheres center of coords (x y z): 22.2305131564987 26.1932020424403 29.8163735543767 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.87591431642629 Final number of output spheres is: 60 Number of polar spheres: 37 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 32