usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 71.6262272727273 58.5567272727273 17.8496818181818 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1170 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 718 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 718 Number of spheres polar: 248, nonpolar: 362, out of current total: 718 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 61.62653 81.57510 48.93575 68.51512 7.89964 27.78467 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 390 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 348 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 324 Spheres center of coords (x y z): 68.8249565740741 61.2757539197531 18.7182857716049 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.74482987865267 Final number of output spheres is: 60 Number of polar spheres: 31 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 22