usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 1.8725625 26.5623125 8.24903125 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1615 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 939 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 923 Number of spheres polar: 254, nonpolar: 422, out of current total: 923 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -8.12319 11.76819 16.98374 36.54222 -1.61609 18.20714 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 326 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 271 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 240 Spheres center of coords (x y z): 1.65419466666667 24.2517169583333 9.56528545833333 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.44289099340485 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 32