usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): -8.1321 20.9667 -21.71425 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1323 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 735 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 735 Number of spheres polar: 296, nonpolar: 329, out of current total: 735 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -17.98289 1.85120 10.99700 30.24572 -31.71282 -11.81841 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 395 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 335 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 297 Spheres center of coords (x y z): -3.6647530976431 22.2141164983165 -22.0760901346802 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.82712270032771 Final number of output spheres is: 60 Number of polar spheres: 24 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 20