usefragsph not on
There are 22 ligand heavy atoms
Ligand center of coords (x y z): 1.99140909090909 29.0034545454545 7.09945454545455
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1433
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 947
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 947
Number of spheres polar: 336, nonpolar: 452, out of current total: 947
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -7.96360 11.86112 19.07655 38.98440 -2.77676 17.08180
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 503
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 431
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 399
Spheres center of coords (x y z): 3.38470892230577 27.0642555639098 7.14499839598997
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.70563919425206
Final number of output spheres is: 60
Number of polar spheres: 30
Number of nonpolar spheres: 29
Number of spheres that are near neither polar nor nonpolar receptor atoms: 1
Final number of spheres that are from crystallographic ligand: 22