Distance from surface specified: 1.80 There are 27 ligand heavy atoms Ligand center of coords (x y z): -36.5955925925926 25.8431851851852 67.472 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 11483 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 10117 WARNING: removing a crystallographic sphere that is distance 1.68955289943819 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 10116 Number of spheres polar: 4907, nonpolar: 4011, out of current total: 10116 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -50.25800 -22.61940 11.84440 39.83760 53.48860 81.46800 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1522 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 852 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 781 Spheres center of coords (x y z): -40.2424138284251 26.9514967989757 68.8712875800256 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 11.0871691199991 Final number of output spheres is: 200 Number of polar spheres: 89 Number of nonpolar spheres: 82 Number of spheres that are near neither polar nor nonpolar receptor atoms: 29 Final number of spheres that are from crystallographic ligand: 26