There are 27 ligand heavy atoms Ligand center of coords (x y z): -36.5955925925926 25.8431851851852 67.472 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 11483 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 8408 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 8408 Number of spheres polar: 3950, nonpolar: 3418, out of current total: 8408 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -48.59460 -24.60980 13.85020 37.83980 55.49300 79.46600 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 1355 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 706 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 662 Spheres center of coords (x y z): -40.3732546827794 26.223183081571 68.7864021148037 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 10.0657938486066 Final number of output spheres is: 120 Number of polar spheres: 59 Number of nonpolar spheres: 49 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 27