usefragsph not on
There are 32 ligand heavy atoms
Ligand center of coords (x y z): 54.0154375 23.80615625 39.33903125
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2146
FINISHED READING IN FILE sph/sph CLUSTER 0
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 939
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 939
Number of spheres polar: 272, nonpolar: 533, out of current total: 939
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 44.04947 63.96407 13.87414 33.80394 29.35415 46.57563
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 474
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 409
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 354
Spheres center of coords (x y z): 55.1197207627118 25.3487583050847 37.601198079096
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.53875247823084
Final number of output spheres is: 60
Number of polar spheres: 20
Number of nonpolar spheres: 34
Number of spheres that are near neither polar nor nonpolar receptor atoms: 6
Final number of spheres that are from crystallographic ligand: 32