Distance from surface specified: 1.80 There are 32 ligand heavy atoms Ligand center of coords (x y z): 54.0154375 23.80615625 39.33903125 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 17940 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 15945 WARNING: removing a crystallographic sphere that is distance 1.99393706019022 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 15460 Number of spheres polar: 8982, nonpolar: 5070, out of current total: 15460 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 40.04780 68.01500 9.81660 37.80500 25.35160 53.27320 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1919 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 1014 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 990 Spheres center of coords (x y z): 54.5995523232324 25.0616298989899 34.6610484848485 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 12.3042528437462 Final number of output spheres is: 200 Number of polar spheres: 90 Number of nonpolar spheres: 93 Number of spheres that are near neither polar nor nonpolar receptor atoms: 17 Final number of spheres that are from crystallographic ligand: 31