There are 32 ligand heavy atoms Ligand center of coords (x y z): 54.0154375 23.80615625 39.33903125 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 17940 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 12572 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 12572 Number of spheres polar: 7424, nonpolar: 4049, out of current total: 12572 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 42.01560 66.01240 11.80800 35.80540 27.34040 51.33420 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 1684 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 733 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 713 Spheres center of coords (x y z): 55.081529312763 25.9333217391304 35.1417175315568 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 10.6043444909026 Final number of output spheres is: 120 Number of polar spheres: 39 Number of nonpolar spheres: 76 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 32