usefragsph not on There are 31 ligand heavy atoms Ligand center of coords (x y z): -18.4480967741936 -5.489 60.0589677419355 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1176 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 813 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 794 Number of spheres polar: 287, nonpolar: 286, out of current total: 794 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -28.42852 -8.95887 -15.43780 4.45576 51.72909 69.31107 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 281 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 223 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 212 Spheres center of coords (x y z): -18.6115948584906 -2.79502646226415 60.6257707075471 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.89426902593223 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 31