Distance from surface specified: 1.80 There are 31 ligand heavy atoms Ligand center of coords (x y z): -18.4480967741936 -5.489 60.0589677419355 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 9286 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 8496 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 7907 Number of spheres polar: 5219, nonpolar: 2062, out of current total: 7907 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -32.43300 -4.45000 -19.47780 8.50940 46.34940 74.05580 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 925 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 501 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 474 Spheres center of coords (x y z): -20.469505907173 -2.69396202531645 62.2326497890296 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 8.22708265280096 Final number of output spheres is: 200 Number of polar spheres: 109 Number of nonpolar spheres: 76 Number of spheres that are near neither polar nor nonpolar receptor atoms: 15 Final number of spheres that are from crystallographic ligand: 31