There are 31 ligand heavy atoms Ligand center of coords (x y z): -18.4480967741936 -5.489 60.0589677419355 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 9286 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 7380 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 7380 Number of spheres polar: 4949, nonpolar: 1856, out of current total: 7380 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -30.44780 -6.46380 -17.48740 6.48360 48.06800 72.05720 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 810 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 437 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 427 Spheres center of coords (x y z): -19.9684590163934 -2.60372880562061 61.859362529274 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.76831309719213 Final number of output spheres is: 120 Number of polar spheres: 73 Number of nonpolar spheres: 38 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 31