Creating binding-site residue list Creating molecular surface real 0m1.296s user 0m0.251s sys 0m0.135s Creating sphgen spheres Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 0:1878 spheres. 101. 101. 101. 101. 101. 101. 101. 101. 101. 101. 101. 101. 101. 101. 101. 104. 104. 104. 107. 107. 107. 107. 107. 107. 107. 107. 107. 108. 108. 108. 108. 108. 108. 108. 108. 108. 108. 108. 108. 113. 113. 115. 115. 115. 117. 117. 117. 120. 120. 213. 213. 213. 213. 213. 214. 214. 218. 218. 218. 218. 218. 219. 223. 223. 231. 231. 231. 231. 231. 231. 231. 231. 231. 231. 231. 231. 231. 232. 234. 234. 234. 234. 234. 234. 234. 234. 234. 234. 234. 234. 237. 246. 246. 246. 246. 246. 246. 249. 251. 251. 251. 251. 251. 251. 251. 253. 253. 253. 253. 253. 254. 256. 256. 256. 256. 261. 261. 261. 261. 261. 261. 261. 261. 261. 261. 261. 265. 266. 266. 266. 266. 266. 266. 266. 266. 266. 266. 266. 266. 266. 266. 266. 266. 266. 266. 266. 266. 266. 266. 266. 266. 266. 266. 266. 266. 266. 266. 267. 267. 267. 267. 267. 267. 267. 267. 267. 267. 267. 267. 268. 268. 268. 268. 268. 268. 268. 268. 268. 268. 268. 268. 268. 268. 268. 268. 269. 269. 269. 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315. 318. 318. 318. 318. 318. 318. 318. 318. 318. 318. 318. 324. 324. 324. 324. 324. 324. 324. 324. 324. 324. 324. 324. 324. 324. 324. 324. 324. 324. 324. 325. 325. 325. 325. 325. 325. 325. 325. 325. 325. 325. 325. 325. 325. 325. 325. 325. 325. 325. 325. 337. 337. 337. 337. 337. 337. 337. 337. 340. 340. 340. 340. 348. 348. 350. 350. 350. 350. 350. 350. 350. 350. 350. 531. 531. 531. 531. 531. 531. 531. 531. 532. 533. 533. 533. 533. 533. 533. 534. 534. 534. 534. 534. 534. 534. 534. 534. 534. 534. 534. 534. 534. 534. 534. 534. 553. 553. 553. 555. 556. 556. 556. 556. 557. 557. 557. 557. 557. 557. 557. 557. 557. 557. 557. 557. 557. 558. 558. 558. 558. 558. 558. 558. 558. 558. 558. 558. 558. 558. 558. 558. 558. 558. 558. 558. 558. 558. 559. 559. 559. 559. 559. 559. 559. 559. 559. 559. 559. 559. 559. 559. 559. 559. 559. 559. 559. 559. 559. 559. 566. 566. 566. 566. 566. 566. 566. 566. 566. 566. 566. 575. 575. 575. 575. 575. 575. 575. 575. 575. 575. 575. 575. 575. 575. 575. 575. 575. 575. 575. 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STOP Generating faster matching2 spheres for docking Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 1: 45 spheres. 9001.9002.9003.9004.9005.9006.9007.9008.9009.9010.9011.9012.9013.9014.9015.9016.9017.9018.9019.9020.9021.9022.9023.9024.9025.9026.9027.9028.9029.9030.9031.9032.9033.9034.9035.9036.9037.9038.9039.9040.9041.9042.9043.9044.9045.FORTRAN STOP Coloring matching spheres Creating box around spheres Hydrogen solvent excluded grid being made FORTRAN STOP real 22m26.207s user 16m24.229s sys 0m0.057s Heavy solvent excluded grid being made FORTRAN STOP real 26m0.038s user 23m32.790s sys 0m0.053s