usefragsph not on
There are 40 ligand heavy atoms
Ligand center of coords (x y z): 10.397175 41.86925 31.866675
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1314
FINISHED READING IN FILE sph/sph CLUSTER 0
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 832
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 827
Number of spheres polar: 232, nonpolar: 365, out of current total: 827
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 0.69856 20.27877 31.90286 51.84801 21.91362 41.81477
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 460
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 412
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 366
Spheres center of coords (x y z): 8.40015535519125 41.3289386612022 33.3730665300546
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.19543313741155
Final number of output spheres is: 60
Number of polar spheres: 22
Number of nonpolar spheres: 29
Number of spheres that are near neither polar nor nonpolar receptor atoms: 9
Final number of spheres that are from crystallographic ligand: 40