Distance from surface specified: 1.80 There are 40 ligand heavy atoms Ligand center of coords (x y z): 10.397175 41.86925 31.866675 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 13627 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 11438 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 11087 Number of spheres polar: 7258, nonpolar: 2824, out of current total: 11087 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 0.21600 24.38080 27.88320 55.86240 17.86980 45.86420 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1366 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 773 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 766 Spheres center of coords (x y z): 9.76041592689296 44.6698182767624 32.1721929503917 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 9.86584540768677 Final number of output spheres is: 200 Number of polar spheres: 109 Number of nonpolar spheres: 74 Number of spheres that are near neither polar nor nonpolar receptor atoms: 17 Final number of spheres that are from crystallographic ligand: 40