#This is what the new input file for mol2db looks like #Proceedures protein No equalize_charges No solvation_correction Yes color_atoms Yes output_color_table No translate_coordinates No hierarchy_spacing No torque_hydrogens Yes #I/O #mol2_file_list filelist mol2_file db.mol2 db_file db.db solvation_table mol.solv color_table positive N.X positive N.4 negative O.X negative O.co2 acceptor O.2 acceptor N.ar acceptor O.3 acceptor S.2 positive C.2 1 N.X negative O.X -1 N.2 negative C.2 1 O.X negative P.3 1 O.X negative P.3 1 O.co2 negative S.o2 1 O.X negative S.o2 1 O.co2 donor N.2 1 H donor N.am 1 H donor N.pl3 1 H donor O.3 1 H acceptor N.ar -1 H acceptor N.ar -1 C.3 donor N.ar 1 H donor O.3 1 H ester_o O.2 2 O.3 amide_o O.2 2 N.pl3 amide_o O.2 2 N.am amide_o O.2 2 N.3 default_color neutral