Creating binding-site residue list Creating molecular surface real 0m3.221s user 0m0.345s sys 0m0.739s Creating sphgen spheres Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 0:1065 spheres. 209. 209. 437. 437. 453. 453. 453. 453. 453. 453. 453. 453. 453. 453. 453. 453. 453. 453. 469. 469. 469. 469. 469. 472. 472. 472. 480. 486. 486. 486. 487. 487. 487. 487. 487. 488. 492. 492. 492. 504. 505. 505. 505. 505. 505. 505. 505. 505. 505. 505. 505. 505. 505. 505. 505. 505. 505. 505. 860. 860. 860. 860. 860. 860. 860. 860. 860. 860. 860. 863. 863. 869. 869. 869. 869. 869. 869. 869. 869. 869. 869. 871. 871. 871. 871. 880. 880. 880. 880. 880. 880. 880. 880. 880. 880. 880. 880. 880. 880. 880. 880. 880. 880. 880. 880. 880. 880. 880. 880. 880. 880. 880. 880. 880. 880. 880. 880. 880. 880. 880. 880. 880. 880. 880. 880. 883. 883. 883. 883. 883. 883. 883. 883. 964. 971. 971. 973.1288.1288.1288.1288.1291.1300.1304.1304.1304.1304.1304.1304.1309.1309.1309.1311.1311.1311.1311.1311.1311.1311.1312.1312.1312.1312.1312.1312.1312.1312.1313.1325.1325.1325.1325.1325.1325.1325.1325.1325.1325.1325.1326.1326.1326.1326.1331.1331.1350.1350.1350.1350.1350.1350.1365.1365.1365.1365.1365.1365.1370.1370.1370.1370.1370.1370.1370.1370.1370.1370.1370.1370.1370.1370.1370.1370.1370.1370.1370.1371.1371.1371.1373.1373.1373.1373.1373.1375.1385.1385.1387.1387.1387.1387.1387.1389.1389.1389.1389.1389.1389.1389.1389.1389.1389.1389.1389.1389.1395.1406.1406.1406.1406.1406.1406.1406.1406.1406.1406.1406.1406.1406.1406.1406.1406.1406.1406.1406.1406.1406.1406.1406.1651.1651.1651.1651.1651.1651.1651.1651.1651.1651.1651.1678.1681.1879.1879.1879.1879.1879.1879.1879.1879.1879.1879.1879.1879.1879.1879.1879.1879.1879.1879.1879.1879.1879.1879.1879.1879.1879.1879.1879.1882.1882.1883.1883.1883.1883.1883.1883.1883.1883.1883.1891.1891.1891.1891.1891.1891.1893.1893.1894.1894.1894.1894.1894.1894.1894.1894.1894.1894.1894.1894.1894.1894.1894.1894.1894.1894.1894.1894.1894.1894.1894.1894.1894.1894.1894.1894.1898.1899.1899.1899.1900.1900.1901.1901.1901.1901.1901.1901.1901.1901.1901.1901.1903.1905.1908.1908.1908.1908.1908.1909.1909.1909.1912.1914.1914.1914.1914.1922.1922.1922.1922.1922.1922.1922.1922.1922.1922.1923.1923.1923.1923.1923.1923.1923.1923.1923.1923.1923.1923.1923.1923.1923.1923.1923.1923.1923.1923.1923.1923.1923.2120.2120.2120.2120.2120.2120.2123.2123.2123.2124.2124.2125.2125.2125.2125.2125.2125.2130.2130.2130.2130.2130.2130.2130.2130.2130.2130.2130.2130.2130.2130.2130.2130.2130.2130.2134.2135.2138.2138.2138.2138.2138.2138.2141.2141.2141.2141.2141.2141.2141.2141.2141.2141.2141.2142.2147.2149.2149.2149.2150.2150.2150.2151.2151.2151.2151.2151.2151.2151.2151.2152.2152.2152.2152.2152.2152.2152.2152.2152.2153.2153.2153.2153.2153.2153.2153.2155.2156.2157.2159.2159.2159.2159.2159.2159.2159.2159.2159.2159.2159.2159.2160.2160.2160.2160.2160.2160.2160.2160.2160.2160.2160.2160.2160.2160.2160.2160.2160.2160.2160.2160.2160.2160.2160.2161.2161.2161.2161.2162.2162.2162.2162.2162.2164.2164.2164.2164.2164.2164.2164.2164.2164.2164.2165.2166.2166.2166.2166.2166.2166.2166.2166.2166.2167.2167.2168.2169.2169.2169.2169.2170.2170.2170.2170.2170.2170.2170.2170.2170.2170.2170.2170.2170.2172.2172.2172.2172.2172.2172.2172.2172.2172.2172.2172.2172.2172.2172.2172.2172.2172.2172.2172.2172.2172.2172.2172.2172.2172.2172.2172.2172.2172.2172.2172.2172.2172.2172.2172.2172.2172.2172.2172.2173.2191.2191.2191.2191.2191.2191.2191.2191.2191.2191.2193.2194.2194.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2196.2196.2196.2196.2210.2210.2210.2210.2210.2210.2211.2211.2313.2313.2313.2447.2450.2450.2450.2450.2451.2451.2451.2451.2451.2451.2451.2451.2451.2451.2451.2451.2451.2451.2451.2451.2451.2451.2451.2451.2451.2458.2458.2458.2458.2460.2460.2460.2460.2460.2461.2461.2463.2466.2469.2469.2469.2469.2470.2470.2528.2528.2528.2528.2528.2528.2531.2531.2531.2531.2531.2531.2536.2536.2537.2543.2543.2543.2543.2545.2545.2545.2545.2545.2545.2554.2554.2554.2554.2554.2554.2554.2554.2554.2554.2555.2557.2559.2559.2559.2559.2559.2559.2561.2561.2561.2561.2561.2561.2561.2561.2561.2561.2561.2561.2561.2561.2561.2565.2565.2566.2566.2566.2566.2566.2566.2566.2566.2566.2566.2568.2568.2568.2569.2569.2569.2569.2569.2569.2569.2569.2569.2569.2570.2570.2572.2573.2573.2573.2573.2575.2575.2575.2575.2575.2575.2575.2575.2575.2579.2580.2580.2580.2580.2580.2580.2580.2580.2580.2580.2580.2580.2581.2581.2581.2581.2581.2581.2581.2581.2585.2585.2585.2585.2585.2588.2588.2588.2588.2588.2588.2588.2588.2588.2588.2588.2588.2588.2588.2591.2591.2591.2591.2591.2591.2591.2591.2591.2592.2603.2603.2603.2603.2603.2603.2603.2603.2603.2603.2603.2603.3359.3359.3359.3359.3359.3359.3362.3369.3369.3369.3369.3369.3369.3369.3369.3369.3369.3369.3369.3369.3369.3369.3369.3369.3369.3369.3369.3369.3369.3369.3369.3369.3371.3371.3377.3377.3483.3483.3483.3483.3483.3484.3484.3484.3484.3484.3486.3486.3486.3486.3486.3486.3487.3487.3489.3489.3489.3489.3489.3489.3489.3489.3489.3489.3489.3489.3489.3489.3489.3490.3490.3491.3491.3491.3491.3491.3491.3491.3491.3491.3491.3491.3491.3491.3491.3491.3491.3491.3491.3491.3491.3491.3491.3491.3492.3492.3492.3492.3492.3492.3492.3492.3492.3492.3492.3492.3492.3492.3492.3492.3493.3493.3493.3495.3495.3497.3497.3497.3497.3497.3497.3497.3498.3498.3498.3498.3498.3505.3505.3505.3505.3505.3505.3505.3505.3505.3506.3506.3506.3506.3506.3506.3506.3507.3507.3507.3507.3507.FORTRAN STOP Generating faster matching2 spheres for docking Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 1: 45 spheres. 9001.9002.9003.9004.9005.9006.9007.9008.9009.9010.9011.9012.9013.9014.9015.9016.9017.9018.9019.9020.9021.9022.9023.9024.9025.9026.9027.9028.9029.9030.9031.9032.9033.9034.9035.9036.9037.9038.9039.9040.9041.9042.9043.9044.9045.FORTRAN STOP Coloring matching spheres Creating box around spheres Hydrogen solvent excluded grid being made FORTRAN STOP real 13m55.677s user 12m42.387s sys 0m0.054s Heavy solvent excluded grid being made FORTRAN STOP real 18m40.023s user 18m24.770s sys 0m0.096s