usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 39.0835714285714 5.01961904761905 6.71971428571429 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1367 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 916 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 916 Number of spheres polar: 277, nonpolar: 323, out of current total: 916 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 29.09178 49.03802 -4.94757 14.97799 -2.78206 16.66518 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 337 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 285 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 277 Spheres center of coords (x y z): 36.4215241155235 4.92816772563177 7.22002407942238 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.6158503664519 Final number of output spheres is: 45 Number of polar spheres: 20 Number of nonpolar spheres: 12 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 21