usefragsph not on
There are 21 ligand heavy atoms
Ligand center of coords (x y z): 39.0835714285714 5.01961904761905 6.71971428571429
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1366
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 915
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 915
Number of spheres polar: 276, nonpolar: 323, out of current total: 915
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 29.09178 49.03802 -4.94756 14.97799 -2.78206 16.66518
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 536
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 470
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 464
Spheres center of coords (x y z): 36.7744312715517 4.91139814655172 7.33985056034483
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.58119398813977
Final number of output spheres is: 60
Number of polar spheres: 24
Number of nonpolar spheres: 20
Number of spheres that are near neither polar nor nonpolar receptor atoms: 16
Final number of spheres that are from crystallographic ligand: 21