Distance from surface specified: 1.80 There are 21 ligand heavy atoms Ligand center of coords (x y z): 39.0835714285714 5.01961904761905 6.71971428571429 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 11287 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 9341 WARNING: removing a crystallographic sphere that is distance 1.71798311982394 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 1.74977084213905 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 9164 Number of spheres polar: 5293, nonpolar: 3032, out of current total: 9164 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 25.09380 53.06800 -8.97440 19.00920 -7.25840 20.70820 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1353 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 787 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 725 Spheres center of coords (x y z): 35.5235017931034 4.89278344827586 6.84435531034482 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 11.0412827389036 Final number of output spheres is: 200 Number of polar spheres: 134 Number of nonpolar spheres: 57 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 19