Creating binding-site residue list Creating molecular surface real 0m2.574s user 0m0.398s sys 0m0.348s Creating sphgen spheres Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 0:1224 spheres. 237. 237. 237. 239. 239. 239. 239. 239. 239. 239. 239. 239. 239. 239. 239. 239. 239. 239. 239. 239. 239. 239. 243. 243. 243. 243. 243. 243. 246. 248. 248. 248. 253. 253. 253. 253. 257. 257. 257. 257. 259. 262. 262. 262. 262. 262. 262. 262. 263. 263. 263. 263. 263. 263. 263. 263. 263. 264. 264. 265. 265. 265. 265. 265. 265. 265. 265. 265. 265. 265. 265. 265. 265. 265. 265. 265. 265. 265. 265. 265. 265. 265. 265. 265. 265. 266. 266. 266. 266. 266. 266. 267. 267. 268. 268. 268. 268. 268. 268. 268. 268. 268. 268. 268. 268. 268. 268. 268. 268. 268. 268. 269. 269. 269. 269. 271. 273. 273. 273. 273. 273. 273. 274. 274. 274. 274. 274. 274. 274. 274. 274. 274. 274. 275. 278. 278. 279. 279. 279. 279. 279. 279. 279. 279. 279. 279. 279. 280. 280. 281. 281. 281. 281. 282. 282. 282. 282. 282. 282. 282. 282. 282. 282. 282. 282. 282. 282. 282. 282. 282. 282. 282. 282. 282. 282. 282. 282. 282. 282. 282. 282. 282. 282. 282. 282. 282. 282. 282. 285. 285. 285. 287. 287. 287. 287. 287. 287. 287. 287. 287. 287. 288. 288. 288. 288. 288. 288. 288. 288. 289. 289. 289. 289. 289. 289. 289. 289. 289. 289. 289. 289. 289. 289. 289. 289. 289. 289. 289. 289. 289. 289. 289. 291. 291. 291. 291. 291. 291. 292. 293. 293. 293. 293. 293. 293. 293. 294. 294. 294. 294. 294. 294. 294. 295. 297. 298. 298. 298. 298. 298. 298. 298. 299. 299. 299. 299. 299. 299. 299. 299. 299. 299. 299. 299. 299. 300. 300. 300. 300. 300. 300. 300. 306. 306. 308. 308. 314. 314. 315. 315. 315. 315. 317. 317. 317. 317. 317. 466. 466. 466. 483. 483. 483. 483. 483. 483. 483. 483. 489. 489. 489. 489. 490. 490. 490. 490. 490. 490. 490. 490. 490. 490. 490. 490. 490. 490. 490. 490. 490. 490. 490. 490. 490. 491. 491. 491. 491. 491. 491. 491. 491. 491. 491. 491. 491. 491. 491. 493. 493. 493. 493. 493. 493. 493. 493. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 496. 498. 498. 498. 509. 509. 509. 509. 509. 509. 509. 509. 511. 511. 511. 836. 837. 837. 837. 837. 837. 837. 837. 838. 838. 838. 838. 838. 838. 838. 838. 838. 838. 838. 838. 839. 839. 839. 839. 839. 839. 839. 839. 839. 844. 845. 845. 846. 846. 846. 846. 846. 846. 846. 851. 853. 853. 853. 854. 854. 854. 854. 854. 854. 854. 854. 854. 854. 854. 854. 854. 854. 854. 854. 854. 854. 854. 854. 854. 854. 855. 855.1099.1099.1099.1099.1099.1102.1103.1103.1103.1103.1103.1103.1103.1103.1103.1107.1107.1109.1109.1109.1109.1115.1115.1115.1115.1115.1115.1115.1115.1115.1115.1115.1115.1115.1115.1115.1115.1115.1115.1119.1119.1119.1119.1119.1119.1119.1119.1119.1119.1119.1119.1119.1119.1119.1120.1120.1120.1120.1120.1124.1124.1124.1124.1124.1165.1165.1165.1165.1165.1165.1165.1165.1165.1165.1165.1165.1172.1174.1174.1181.1181.1181.1181.1182.1182.1182.1182.1182.1182.1182.1182.1182.1182.1182.1182.1182.1182.1182.1182.1182.1182.1182.1182.1182.1182.1182.1182.1182.1182.1182.1182.1182.1182.1182.1182.1182.1182.1182.1186.1186.1186.1186.1186.1186.1186.1186.1186.1190.1190.1190.1194.1194.1194.1194.1194.1194.1194.1194.1194.1194.1194.1199.1199.1199.1199.1200.1200.1200.1200.1200.1200.1200.1200.1200.1200.1201.1201.1201.1201.1201.1201.1201.1201.1201.1201.1202.1202.1202.1202.1202.1202.1202.1202.1202.1203.1203.1203.1203.1203.1203.1203.1203.1203.1203.1203.1203.1203.1203.1203.1203.1203.1203.1203.1203.1203.1203.1203.1203.1203.1203.1204.1204.1204.1206.1206.1206.1206.1209.1209.1209.1209.1210.1210.1210.1210.1210.1210.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1211.1214.1218.1218.1218.1218.1219.1221.1221.1222.1222.1223.1223.1223.1223.1223.1223.1223.1223.1223.1223.1223.1223.1223.1223.1223.1224.1224.1224.1224.1224.1224.1224.1225.1225.1225.1225.1225.1225.1225.1225.1225.1225.1225.1225.1225.1225.1226.1226.1226.1226.1226.1226.1226.1226.1226.1226.1226.1226.1226.1226.1226.1226.1227.1227.1227.1227.1227.1227.1227.1227.1227.1227.1227.1227.1227.1227.1227.1227.1227.1227.1236.1238.1238.1238.1239.1239.1239.1239.1240.1240.1240.1240.1240.1240.1240.1240.1241.1241.1242.1243.1243.1243.1243.1244.1244.1244.1244.1244.1244.1244.1245.1245.1245.1245.1245.1245.1250.1251.1251.1251.1251.1251.1252.1252.1252.1253.1253.1253.1253.1253.1253.1253.1253.1253.1253.1253.1253.1253.1253.1253.1253.1253.1253.1253.1253.1253.1254.1254.1254.1258.1258.1266.1266.1266.1266.1266.1267.1267.1267.1267.1267.1267.1267.1267.1267.1267.1267.1267.1268.1268.1268.1268.1268.1268.1269.1269.1269.1269.1359.1359.1361.1361.1361.1362.1362.1362.1362.1362.1362.1362.1363.1363.1363.1363.1363.1370.1370.1370.1370.1370.1370.1370.1370.1370.1370.1370.1371.1371.1371.1371.1371.1371.1371.1371.1371.1371.1371.1371.1371.1371.1371.1371.1371.1468.1468.1469.1469.1469.1469.1469.1469.1469.1469.1469.1469.1469.1469.1469.1469.1469.1469.1469.1469.1469.1469.1469.1469.1469.1469.1469.1469.1469.1469.1469.1469.1471.1471.1475.1478.1478.1478.1478.1480.1480.1480.1480.1480.1480.1480.1480.1481.1481.1481.1481.1481.1481.1481.1481.1481.1481.1481.1481.1481.1481.1481.1481.1482.1482.1482.1482.1482.1709.1709.1709.1709.1709.1709.1709.1709.1709.1709.1709.1713.1713.1713.1713.1743.1743.1746.1746.1746.1746.1746.1748.1749.1749.1751.1751.1751.1751.1751.1751.1751.1751.1751.1751.1751.1803.1806.1806.1806.1806.1807.1807.1807.1807.1807.1807.1809.1809.1809.2132.2132.2132.2132.2132.2132.2132.2132.2132.2132.2132.2132.2132.2132.2132.2132.2133.2133.2133.2133.2133.2133.2133.2133.2133.2133.2133.2133.2133.2133.2133.2133.2134.2134.2134.2134.2134.2134.2134.2134.2134.2134.2134.2134.2134.2134.2134.2134.2134.2134.2134.2143.2143.2143.2143.2145.2145.2145.2145.2145.2145.2145.2145.2145.2145.2145.2145.2152.2158.2158.2162.2162.2162.2162.2162.2162.2162.2162.2162.2162.2168.2168.2168.2168.2168.2168.2168.2168.2174.2179.2179.2179.2179.2179.2179.2179.2180.2180.2180.2180.2180.2180.2180.2180.2180.2180.2180.2180.2180.2180.2180.2180.2180.2180.2180.2180.2180.2180.2180.2180.2181.2181.2181.2183.2183.2183.2183.2185.2185.2185.2185.2185.2185.2185.2185.2185.2185.2185.2185.2190.2190.2190.2190.2190.2190.2192.2194.2194.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2195.2197.2197.2197.2197.2197.2198.2198.2200.2200.2200.2200.2200.2200.2201.FORTRAN STOP Generating faster matching2 spheres for docking Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 1: 45 spheres. 9001.9002.9003.9004.9005.9006.9007.9008.9009.9010.9011.9012.9013.9014.9015.9016.9017.9018.9019.9020.9021.9022.9023.9024.9025.9026.9027.9028.9029.9030.9031.9032.9033.9034.9035.9036.9037.9038.9039.9040.9041.9042.9043.9044.9045.FORTRAN STOP Coloring matching spheres Creating box around spheres Hydrogen solvent excluded grid being made FORTRAN STOP real 23m15.715s user 23m13.596s sys 0m0.250s Heavy solvent excluded grid being made FORTRAN STOP real 31m53.479s user 31m50.644s sys 0m0.297s