usefragsph not on
There are 22 ligand heavy atoms
Ligand center of coords (x y z): 9.468 32.4635909090909 60.6505
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1332
FINISHED READING IN FILE sph/sph CLUSTER 0
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 693
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 693
Number of spheres polar: 166, nonpolar: 344, out of current total: 693
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -0.51844 19.40285 22.46609 42.36179 54.46455 70.64148
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 234
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 188
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 159
Spheres center of coords (x y z): 6.93110610062893 30.3155452201258 61.5111511949686
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.93570097917164
Final number of output spheres is: 45
Number of polar spheres: 11
Number of nonpolar spheres: 26
Number of spheres that are near neither polar nor nonpolar receptor atoms: 8
Final number of spheres that are from crystallographic ligand: 22