Distance from surface specified: 1.80 There are 22 ligand heavy atoms Ligand center of coords (x y z): 9.468 32.4635909090909 60.6505 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 13529 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 11879 WARNING: removing a crystallographic sphere that is distance 1.94884324664658 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 11494 Number of spheres polar: 5253, nonpolar: 4712, out of current total: 11494 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.53200 23.46620 18.46480 45.30640 49.02460 74.65040 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1315 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 768 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 721 Spheres center of coords (x y z): 10.4855001386962 30.358080998613 65.8397406380028 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 12.6353075350349 Final number of output spheres is: 200 Number of polar spheres: 78 Number of nonpolar spheres: 97 Number of spheres that are near neither polar nor nonpolar receptor atoms: 25 Final number of spheres that are from crystallographic ligand: 21