usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 114.671 66.1135151515152 10.5548181818182 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1275 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 687 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 687 Number of spheres polar: 142, nonpolar: 376, out of current total: 687 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 104.84654 124.61151 56.17010 76.04501 0.59011 20.28962 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 378 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 323 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 301 Spheres center of coords (x y z): 112.588968239203 66.4254600996678 11.7759849169435 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.15450430681283 Final number of output spheres is: 60 Number of polar spheres: 15 Number of nonpolar spheres: 42 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 33