Creating binding-site residue list Creating molecular surface real 0m1.404s user 0m0.241s sys 0m0.132s Creating sphgen spheres Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 0:1292 spheres. 262. 265. 265. 265. 265. 265. 265. 265. 265. 265. 265. 266. 267. 267. 267. 267. 269. 269. 269. 269. 269. 269. 269. 269. 269. 529. 529. 529. 529. 529. 529. 529. 529. 529. 529. 529. 529. 529. 529. 529. 529. 529. 529. 529. 529. 529. 529. 529. 529. 529. 529. 529. 529. 529. 529. 529. 529. 529. 529. 529. 538. 538. 539. 539. 539. 539. 539. 540. 540. 540. 544. 546. 546. 546. 546. 546. 546. 546. 546. 546. 546. 546. 546. 546. 546. 546. 546. 546. 546. 547. 547. 547. 547. 547. 547. 559. 559. 559. 559. 559. 559. 559. 560. 560. 560. 560. 560. 560. 560. 560. 560. 560. 560. 560. 560. 560. 560. 560. 560. 560. 560. 560. 560. 562. 562. 562. 562. 562. 562. 562. 562. 562. 562. 563. 563. 563. 563. 563. 563. 563. 563. 563. 563. 564. 564. 564. 564. 564. 568. 568. 568. 568. 568. 570. 570. 572. 572. 574. 574. 574. 574. 574. 574. 574. 574. 574. 574. 575. 575. 575. 575. 576. 576. 576. 576. 577. 577. 577. 577. 577. 581. 581. 581. 581. 582. 582. 582. 582. 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STOP Generating faster matching2 spheres for docking Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 1: 45 spheres. 9001.9002.9003.9004.9005.9006.9007.9008.9009.9010.9011.9012.9013.9014.9015.9016.9017.9018.9019.9020.9021.9022.9023.9024.9025.9026.9027.9028.9029.9030.9031.9032.9033.9034.9035.9036.9037.9038.9039.9040.9041.9042.9043.9044.9045.FORTRAN STOP Coloring matching spheres Creating box around spheres Hydrogen solvent excluded grid being made FORTRAN STOP real 17m34.076s user 14m17.504s sys 0m0.250s Heavy solvent excluded grid being made FORTRAN STOP real 30m58.084s user 20m36.828s sys 0m0.092s