Creating binding-site residue list Creating molecular surface real 0m1.376s user 0m0.218s sys 0m0.134s Creating sphgen spheres Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 0:1241 spheres. 172. 172. 173. 173. 173. 173. 173. 173. 173. 173. 173. 173. 173. 174. 174. 174. 174. 174. 174. 174. 175. 175. 175. 175. 175. 175. 175. 175. 175. 175. 175. 175. 175. 175. 179. 179. 179. 179. 179. 183. 184. 184. 184. 184. 184. 184. 184. 186. 186. 186. 186. 186. 188. 190. 190. 190. 190. 190. 190. 190. 190. 190. 190. 190. 190. 190. 190. 190. 190. 190. 190. 190. 191. 191. 191. 191. 191. 191. 191. 191. 191. 193. 193. 193. 193. 193. 193. 193. 193. 193. 193. 193. 193. 193. 193. 193. 194. 194. 194. 194. 194. 194. 194. 194. 194. 194. 194. 194. 194. 194. 194. 196. 196. 196. 196. 196. 196. 196. 196. 196. 196. 196. 197. 197. 201. 202. 202. 202. 202. 202. 202. 202. 203. 203. 205. 205. 205. 205. 205. 205. 205. 205. 205. 205. 205. 205. 205. 205. 205. 205. 205. 205. 205. 205. 205. 205. 205. 205. 205. 205. 205. 205. 205. 205. 206. 206. 206. 207. 207. 207. 207. 207. 207. 207. 207. 207. 229. 229. 229. 229. 229. 229. 229. 229. 229. 229. 229. 229. 229. 230. 230. 230. 230. 230. 230. 230. 230. 230. 230. 230. 230. 230. 231. 231. 237. 237. 237. 237. 238. 238. 238. 239. 239. 240. 240. 246. 246. 246. 246. 246. 246. 246. 246. 246. 246. 246. 246. 246. 246. 246. 246. 246. 246. 246. 247. 247. 247. 247. 247. 247. 247. 247. 247. 247. 247. 247. 247. 247. 247. 247. 247. 247. 247. 247. 247. 247. 247. 247. 247. 247. 247. 247. 247. 247. 247. 247. 247. 254. 254. 254. 259. 259. 261. 261. 261. 261. 261. 269. 269. 269. 269. 269. 269. 271. 271. 330. 330. 330. 330. 331. 331. 331. 331. 331. 333. 333. 333. 333. 333. 333. 335. 335. 335. 335. 335. 335. 335. 342. 342. 342. 342. 345. 345. 345. 347. 347. 347. 347. 347. 347. 347. 347. 347. 347. 347. 347. 347. 347. 347. 347. 354. 354. 354. 354. 354. 354. 354. 354. 354. 354. 354. 354. 359. 359. 359. 359. 359. 359. 360. 360. 360. 360. 360. 360. 361. 361. 361. 361. 361. 361. 361. 361. 361. 361. 361. 361. 362. 362. 362. 362. 362. 362. 362. 362. 362. 362. 362. 362. 362. 362. 362. 362. 362. 362. 362. 362. 362. 362. 362. 362. 362. 362. 362. 362. 362. 362. 362. 362. 362. 362. 362. 362. 362. 362. 362. 362. 362. 362. 362. 362. 362. 362. 363. 363. 363. 363. 363. 363. 363. 363. 363. 363. 363. 363. 363. 363. 363. 363. 363. 363. 363. 367. 367. 368. 368. 368. 369. 369. 369. 369. 369. 441. 441. 441. 441. 441. 441. 441. 441. 441. 441. 441. 441. 443. 446. 446. 446. 446. 446. 446. 446. 448. 448. 448. 448. 464. 465. 465. 465. 465. 465. 465. 465. 465. 465. 465. 465. 465. 465. 465. 468. 468. 468. 468. 468. 470. 470. 470. 470. 470. 470. 470. 470. 470. 471. 471. 471. 471. 472. 472. 472. 472. 495. 495. 495. 495. 495. 495. 495. 497. 497. 497. 497. 497. 497. 498. 498. 498. 499. 499. 499. 499. 500. 500. 501. 501. 501. 501. 570. 570. 570. 571. 578. 578. 578. 578. 578. 578. 580. 580. 580. 580. 580. 580. 580. 588. 588. 588. 588. 588. 588. 588. 588. 588. 588. 588. 588. 588. 588. 588. 589. 589. 589. 589. 589. 589. 589. 590. 590. 590. 590. 591. 591. 591. 591. 592. 592. 592. 592. 592. 592. 592. 592. 592. 592. 592. 592. 592. 592. 593. 593. 596. 596. 596. 596. 597. 597. 597. 597. 597. 597. 597. 597. 597. 597. 597. 597. 604. 609. 609. 612. 612. 612. 612. 612. 612. 612. 612. 612. 612. 612. 612. 686. 686. 686. 686. 686. 694. 694. 694. 694. 694. 694. 694. 694. 694. 694. 694. 694. 694. 694. 701. 701. 701. 702. 702. 702. 702. 702. 702. 702. 702. 702. 702. 702. 702. 702. 702. 706. 709. 709. 709. 709. 711. 711. 711. 711. 711. 711. 711. 711. 711. 711. 711. 711. 712. 712. 712. 715. 715. 715. 715. 715. 715. 715. 715. 715. 715. 719. 723. 723. 723. 723. 723. 723. 723. 723. 723. 723. 723. 723. 724. 727. 728. 730. 732. 735. 735. 735. 735. 735. 735. 735. 736. 736. 736. 737. 737. 737. 737. 737. 737. 738. 739. 739. 739. 739. 739. 739. 740. 742. 743. 743. 743. 744. 744. 744. 744. 744. 744. 744. 747. 747. 747. 747. 747. 747. 747. 747. 747. 750. 750. 750. 750. 750. 750. 750. 750. 750. 750. 750. 750. 750. 750. 750. 750. 750. 750. 750. 750. 750. 750. 750. 750. 750. 750. 750. 750. 750. 750. 750. 750. 753. 757. 757. 757. 757. 757. 757. 757. 765. 765. 765. 765. 765. 765. 765. 765. 765. 765. 765. 765. 772. 773. 773. 773. 773. 773. 773. 773. 773. 773. 773. 773. 773. 773. 773. 773. 773. 773. 773. 773. 773. 773. 773. 773. 778. 778. 778. 778. 778. 778. 778. 778. 778. 778. 778. 778. 778. 778. 778. 778. 779. 780. 780. 781. 781. 781. 781. 781. 781. 781. 781. 781. 781. 781. 781. 781. 781. 781. 781. 781. 781. 781. 781. 781. 788. 790. 790. 790. 814. 814. 814. 814. 814. 816. 816. 816. 816. 816. 816. 816. 816. 816. 816. 816. 816. 816. 816. 816. 816. 816. 816. 816. 816. 816. 816. 816. 816. 816. 816. 816. 816. 816. 816. 816.1058.1058.1060.1060.1060.1060.1060.1065.1079.1079.1079.1079.1079.1079.1082.1082.1082.1082.1082.1082.1082.1082.1082.1082.1082.1082.1082.1083.1083.1083.1083.1083.1083.1084.1084.1085.1085.1085.1085.1085.1085.1085.1085.1085.1085.1085.1085.1085.1085.1085.1085.1085.1089.1089.1089.1089.1089.1089.1089.1092.1092.1092.1100.1100.1100.1100.1103.1103.1103.1103.1103.1103.1103.1103.1104.1104.1104.1104.1104.1104.1104.1104.1104.1104.1104.1104.1104.1104.1104.1104.1104.1104.1113.1113.1113.1113.1113.1113.1114.1114.1114.1114.1114.1114.1114.1114.1114.1114.1114.1114.1114.1114.1114.1114.1114.1114.1120.1137.1137.1137.1137.1137.1137.1137.1137.1137.1137.1137.1137.1137.1137.1137.1137.1137.1137.1137.1137.1137.1137.1137.1137.1137.1137.1137.1137.1137.1137.1137.1137.1137.1138.1138.1138.1138.1138.1138.1138.1138.1138.1138.1138.1138.1138.1138.1138.1138.1138.1138.1138.1150.1150.1150.1150.1150.1150.1150.1150.1150.1150.1152.1156.1156.1157.1157.1157.1157.1157.1157.1157.1157.1157.1157.1157.1157.1157.1158.1158.1158.1158.1158.1158.1158.1158.1158.1194.1194.1194.1194.1194.1194.1194.1195.1195.1195.1195.1195.1195.1195.1195.1195.1195.1195.1195.1195.1195.1195.1195.1195.1195.1195.1208.1208.1208.1208.1209.1209.1209.1210.1210.1210.1210.1213.1214.1214.1214.1214.1214.1214.1214.1214.1214.1214.1214.1214.1214.1214.1215.1215.1215.1215.1215.1215.1215.1215.1216.1216.1216.1216.1216.1216.1216.1216.1216.1216.1216.1216.1216.1216.1216.1216.1216.1216.1216.1216.1216.1216.1216.1216.1216.1218.1218.1219.1219.1220.1220.1220.1222.1222.1222.1228.1229.1229.1229.1229.1229.1229.1229.1229.1229.1229.1229.1229.1229.1229.1229.1229.1229.1229.1229.1229.1230.1231.1231.1231.1231.1231.1231.1231.1231.1231.1231.1231.1231.1231.1231.FORTRAN STOP Generating faster matching2 spheres for docking Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 1: 45 spheres. 9001.9002.9003.9004.9005.9006.9007.9008.9009.9010.9011.9012.9013.9014.9015.9016.9017.9018.9019.9020.9021.9022.9023.9024.9025.9026.9027.9028.9029.9030.9031.9032.9033.9034.9035.9036.9037.9038.9039.9040.9041.9042.9043.9044.9045.FORTRAN STOP Coloring matching spheres Creating box around spheres Hydrogen solvent excluded grid being made FORTRAN STOP real 17m27.117s user 17m1.265s sys 0m0.196s Heavy solvent excluded grid being made FORTRAN STOP real 23m40.030s user 23m35.388s sys 0m0.065s