usefragsph not on There are 29 ligand heavy atoms Ligand center of coords (x y z): 37.8585517241379 5.89365517241379 16.8557586206897 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1464 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 675 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 675 Number of spheres polar: 150, nonpolar: 382, out of current total: 675 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 27.91936 47.83406 -4.07055 15.74623 7.00401 26.84674 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 236 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 191 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 155 Spheres center of coords (x y z): 35.6748972903226 4.79574174193548 19.0410089677419 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.51232069468659 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 29