Distance from surface specified: 1.80 There are 29 ligand heavy atoms Ligand center of coords (x y z): 37.8585517241379 5.89365517241379 16.8557586206897 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 14047 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 12153 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 12153 Number of spheres polar: 5617, nonpolar: 5152, out of current total: 12153 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 23.87760 51.81340 -8.10000 19.89280 2.87100 30.85460 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1701 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 891 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 881 Spheres center of coords (x y z): 34.5770079455164 6.50170374574347 17.688113507378 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 11.8161051332754 Final number of output spheres is: 200 Number of polar spheres: 124 Number of nonpolar spheres: 68 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 29